Part:BBa_K660500

Multiple Cloning Site (MCS)

This BioBrick contains Multiple Cloning Site. Using this BioBrick a gene can be tested in a construct even before putting it into BioBrick format. This way a lot of time can be saved, in a case when a construct does not work.

We wanted to test multiple genes with the same promoter, RBS and terminator to characterise PDE, latherin, latherin with HIS tag, ranaspumin-2 and ranaspumin-2 with HIS tag , which are some of our novel biobricks. To ligate one of these constructs together requires three or four (three if you’re using the 3A method) restriction and ligation reactions. So to test all five under the same promoter, RBS and terminator would require at the very least 15 restriction and ligation reactions. However using our multiple cloning site (MCS) biobrick it is possible to create the promoter, RBS, MCS and terminator construct in three-four ligations before inserting each gene into the MCS with just one extra restriction and ligation step. So it would be possible to have all five constructs made in just nine restriction and ligation reactions, saving a huge amount of time. And for each extra gene you want to test this would only require one extra restriction and ligation rather than three or four. This is great for characterisation of a large number of biobricks. We suggest that if you plan to use the MCS biobrick, when you are adding biobrick ends to your PCR primers or sequence for synthesis , add one of the restriction sites included in our MCS before and after the whole construct. As long as you ensure the gene is still in-frame then you can easily insert it into your standard construct for testing. When it comes to submission, just restrict the novel biobrick out of the characterisation construct and into ligate your submission vector . Restricting with X+S only just your gene will drop out. Restricting with E+P will give fragments for your promoter+ RBS and terminator as well as your gene however the gene will usually be much larger than the fragments allowing for gel purification of only the restricted gene.

Sequence and Features

Assembly Compatibility:

• 10
  COMPATIBLE WITH RFC[10]
• 12
  COMPATIBLE WITH RFC[12]
• 21
  INCOMPATIBLE WITH RFC[21]

  Illegal BamHI site found at 19
  Illegal XhoI site found at 13
  
• 23
  COMPATIBLE WITH RFC[23]
• 25
  COMPATIBLE WITH RFC[25]
• 1000
  COMPATIBLE WITH RFC[1000]